鼠疫耶爾森菌基因組重排研究進展

謝芳 (綜述) 海榮 (審校) 俞東征 (審校)

引用本文: 謝芳 (綜述), 海榮 (審校), 俞東征 (審校). 鼠疫耶爾森菌基因組重排研究進展[J]. 疾病監測, 2010, 25(5): 390-393. DOI: 10.3784/j.issn.1003-9961.2010.05.016 shu
Citation:  XIE Fang, HAI Rong and YU Dong-zheng. Progress in research on genome rearrangement of Yersinia pestis[J]. Disease Surveillance, 2010, 25(5): 390-393. DOI: 10.3784/j.issn.1003-9961.2010.05.016 shu

鼠疫耶爾森菌基因組重排研究進展

    通信作者: 海榮 (審校),
摘要: 介紹細菌基因組重排現象的發現、特點以及重排后對細菌遺傳和進化所產生的影響。經研究發現鼠疫菌基因組中的插入序列和重復序列是造成鼠疫菌基因組頻繁重排的重要原因,不同來源鼠疫菌基因組的重排有一定的規律性,它們之間的遺傳學距離以及基因之間相應的連接方式是識別和鑒定鼠疫菌的重要指標。

English

    1. [1]. Dobzhansky T, Sturtevant AH.Inversions in the chromosomes of Drosophila pseudoobscura[J]. Genetics,1938,23:28-64.

      [2]. Palmer JD, Herbon LA.Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence[J].Journal of Molecular Evolution,1988,27:87-97.

      [3]. Nadeau JH, Taylor BA.Lengths of chromosomal segments conserved since divergence of man and mouse[J].ProcNatl Acad Sci,1984,81:814-818.

      [4]. Kececioglu J, Sankoff D.Exact and approximation algorithms for the inversion distance between two permutations[J]. Algorithmica,1995,13:180-210.

      [5]. Bafna V, Pevzner PA.Sorting by reversals:Genome rearrangements in plant organelles and evolutionary history of X chromosome[J].Mol Biol,1995,12:239-246.

      [6]. Hannenhalli S, Pevzner PA.Transforming men into mice (polynomial algorithm for genomic distance problem) .In proceedings of the 36th annual IEEE symposium on foundations of computer science,1995:581-592.

      [7]. Hannenhalli S, Pevzner PA. Transforming cabbage into turnip (polynomial algorithm for sorting signed permutations by reversals) .In Proceedings of the 27th Annual ACM Symposium on the Theory of Computing,1995:178-189.

      [8]. Bourque G, Zdobnov EM, Bork P, et al.Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages[J].Genome Res,2005,15:98-110.

      [9]. Hinsch H, Hannenhalli S.Recurring genomic breaks in independent lineages support genomic fragility[J].BMC Evol Biol,2006,6:90.

      [10]. Ma J, Zhang L, Suh BB, et al.Reconstructing contiguous regions of an ancestral genome[J].Genome Res,2006,16:1557-1565.

      [11]. Suyama M, Bork P.Evolution of prokaryotic gene order:genome rearrangements in closely related species[J].Trends Genet,2001,17:10-13.

      [12]. Achaz G, Coissac E, Netter P, et al.Associations between inverted repeats and the structural evolution of bacterial genomes[J].Genetics,2003,164:1279-1289.

      [13]. Rocha EP.DNA repeats lead to the accelerated loss of gene order in bacteria [J].Trends Genet,2003,19:600-603.

      [14]. Lerat E, Ochman H.Exploring the outer limits of bacterial pseudogenes[J].Genome Res,2004,14:2273-2278.

      [15]. Achaz G, Rocha P, Netter, et al.Origin and fate of repeats in bacteria[J].Nucleic Acids Res,2002,30:2987-2994.

      [16]. Michael J, Pierre P, Galas DJ.Mutational analysis of the open reading frames in the Transposable Element IS1[J].Genetics,1998,120:47-55.

      [17]. Otto SP.The evolutionary consequences of polyploidy[J].Cell,2007,131:452-462.

      [18]. Diarmaid H.Evaluating genome dynamics:the constraints on rearrangements within bacterial genomes[J].Genome Biology,2000,1(6):61-68.

      [19]. Eisen JA, Heidelberg JF, White O, et al.Evidence for symmetric chromosomal inversions around the replication origin in bacteria[J].Genome Biology,2000,1:11.

      [20]. Stibitz S, Yang MS.Genomic plasticity in natural populations of Bordetella pertussis[J].J Bacteriol,1999,181:5512-5515.

      [21]. Sousa C, de Lorenzo V.A Modulation of gene expression through chromosomal positioning in Escherichia coli[J].Microbiology,1997,143:2071-2078.

      [22]. Hacker J.Prokaryotic chromosomes and disease[J].Science,2003,301:790-793.

      [23]. Ochman H.Lateral gene transfer and the nature of bacterial innovation[J].Nature,2000,405:299-304.

      [24]. Yang RF,Huang PT.Comparative and evolutionary genomics of Yersinia pestis[J].Medical Journal of Chinese Peoples Liberation Army,2004,29(3):189-191.(in Chinese)楊瑞馥,黃培堂.鼠疫耶爾森氏菌比較和進化基因組學研究 [J].解放軍醫學雜志,2004,29(3):189-191.

      [25]. Ochman H, Lawrence JG, Groisman EA.Lateral gene transfer and the nature of bacterial innovation[J].Nature,2000,405,299-304.

      [26]. Auerbach RK, Tuanuok A, Probert WS, et al.Yersinia pestis evolution on a small timescale:comparison of whole genome sequences from North America [J].PloS ONE,2007,8:e770.

      [27]. Parkhill J, Wren BW, Thomson NR, et al.Genome sequence of Yersinia pestis, the causative agent of plague[J]. Nature,2001,413:523-527.

      [28]. Song YJ, Tong ZZ, Wang J, et al.Detection and analysis of complete genome sequence of Yersinia pestis human-avirulent strain 91001[J].Medical Journal of Chinese People’s Liberation Army,2004,29:192-199.(in Chinese)宋亞軍,童宗中,王津,等.鼠疫耶爾森菌布氏田鼠疫源地菌株91001 全基因組序列測定及初步分析[J].解放軍醫學雜志,2004,29:192-199.

      [29]. Chain, Carniel F, Larimer W, et al.Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis[J].Proc Natl Acad Sci USA,2004,101:13826-13831.

      [30]. Deng W, Burland V, Plunkett G, et al.Genome sequence of Yersinia pestis KIM[J].J Bacteriol,2002,184:4601-4611.

      [31]. Zhang ZK,Hai R.Spatial variation of Yersinia pestis from Yunnan province of China[J].Am J Trop Med Hyg,2009,81(4):714-717

      [32]. Dai EH.Typing of genome rearrangement of Yersinia pestis .Guiyang:Chinese Medical Association,2006.戴二黑.鼠疫耶爾森菌基因組重排譜分型的研究 .貴陽:中華醫學會,2006.

      [33]. Liang Y, Hou XX, Wang Y, et al.Genome rearrangements of completely sequenced strains of Yersinia pestis[J].J Clin Microbiol,2010,3.


    1. [1]

      蔣羽李建云梁瑩蔡虹彭遙王宇萌劉芳徐冬蕾王姝懿張志凱海榮張忠兵李偉范蒙光 . 內蒙古鼠疫耶爾森菌差異區段分型特征研究. 疾病監測, 2016, 31(5): 406-410. DOI: 10.3784/j.issn.1003-9961.2016.05.013

    2. [2]

      王宇萌梁瑩張恩民馬娜申小娜蔡虹張志凱夏連續梁未麗代瑞霞李偉 . 青藏高原喜馬拉雅旱獺鼠疫疫源地鼠疫耶爾森菌遺傳特征分析. 疾病監測, 2018, 33(6): 457-462. DOI: 10.3784/j.issn.1003-9961.2018.06.005

    3. [3]

      朱俊潔王鵬張蓉海榮梁瑩宋志忠 . 云南省鼠疫耶爾森菌多位點可變數目串聯重復序列分析. 疾病監測, 2013, 28(10): 848-852. DOI: 10.3784/j.issn.1003-9961.2013.10.016

    4. [4]

      崔長弘董燕 . 先天性風疹綜合征的流行病學研究進展. 疾病監測, 2012, 27(11): 918-922. DOI: 10.3784/j.issn.1003-9961.2012.11.022

    5. [5]

      張麗娟 . 中國嗜吞噬細胞無形體及無形體病研究進展. 疾病監測, 2014, 29(5): 409-414. DOI: 10.3784/j.issn.1003-9961.2014.05.019

    6. [6]

      王凱么鴻雁劉劍君 . 蔬菜大棚微環境對人體健康的影響. 疾病監測, 2015, 30(6): 507-512. DOI: 10.3784/j.issn.1003-9961.2015.06.018

    7. [7]

      周海健闞飆 . 細菌基因組分型方法的應用研究進展. 疾病監測, 2016, 31(8): 668-675. DOI: 10.3784/j.issn.1003-9961.2016.08.013

    8. [8]

      . 聚合酶鏈反應法和分離培養法篩檢小腸結腸炎耶爾森菌方法的比較研究. 疾病監測, 2013, 28(6): 456-458. DOI: 10.3784/j.issn.1003-9961.2013.6.010

    9. [9]

      趙偉白曉瀟劉小雨蘇領彥 . 霍亂弧菌基因組DNA提取方法的比較研究. 疾病監測, 2012, 27(9): 735-737. DOI: 10.3784/j.issn.1003-9961.2012.9.021

    10. [10]

      吳樹聲郭文濤杜鵬程加洛 . 鼠疫菌對抗生素敏感性和耐藥性的研究進展. 疾病監測, 2013, 28(9): 781-783. DOI: 10.3784/j.issn.1003-9961.2013.9.022

    11. [11]

      俞丹尹家祥 . 鼠形動物自然感染巴爾通體的研究進展. 疾病監測, 2018, 33(1): 15-19. DOI: 10.3784/j.issn.1003-9961.2018.01.005

  • 加載中
計量
  • PDF下載量:  1486
  • 文章訪問數:  2012
  • HTML全文瀏覽量:  9
  • 引證文獻數: 0
文章相關
  • 通信作者:  海榮 (審校),
  • 收稿日期:  2009-12-04
  • 刊出日期:  2010-05-28
通信作者: 陳斌, [email protected]
  • 1. 

    沈陽化工大學材料科學與工程學院 沈陽 110142

  1. 本站搜索
  2. 百度學術搜索
  3. 萬方數據庫搜索
  4. CNKI搜索

/

返回文章

在線交流

广西体彩11选五开奖